PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g23420.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 232aa MW: 26232.5 Da PI: 9.4351

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g23420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.1	4.2e-22	2	84	13	86
trihelix 13 arremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++r+ e+++rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++es s +++ ++l+ Vradi08g23420.1 2 GKRDAENKFRRGRtaglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLR 84 589999**987777888888*******************************************99999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-10	26	79	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGKRDAENKF RRGRTAGLPL GSGQVEPKWA SVSSYCRKHG VNRGPVQCRK RWSNLAGDYK 60 KIKEWESQIR EESDSFWVMR NDLRRDRKLP GFFDKEVYDI LDSGSQDFEQ DEVSASPEKK 120 DIFPPSNRDF PAPIPISGVT NEKQSTPNPE MGSTSQGERK RKRLSTEGGE ETLQIHLIDV 180 LERNGKMLSA QLEAQNINFQ LDREQRKING SNLVAVLDKL ADALGRIADK L*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g23420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-172	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027936927.1	1e-142	trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	4e-91	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A445IUR6	1e-127	A0A445IUR6_GLYSO; Trihelix transcription factor ASR3 isoform A
TrEMBL	I1LFM1	1e-127	I1LFM1_SOYBN; Uncharacterized protein
STRING	GLYMA10G44620.1	1e-128	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-84	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]