PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g00080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 245aa    MW: 27915.7 Da    PI: 4.772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-0879128555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +n   ++R ++++++f  L   +P  +    ++K +K +iL kA +Y+++L+
  Vradi09g00080.1  79 KNTDRKQRQQKLRERFLALSATIPGfQ--KMNEKKDKTSILDKASNYVRQLE 128
                      68888********************76..8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1574127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-679128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1279142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-780133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-784132No hitNo description
Gene3DG3DSA:4.10.280.102.4E-1184140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MFFHDSNSHR LHLLTLFTHS LILQLDPTTF SLLKSMEESG ENWPSDSYLE VDDDVKDLCF  60
DDEEFASEED DGDSFPEMKN TDRKQRQQKL RERFLALSAT IPGFQKMNEK KDKTSILDKA  120
SNYVRQLEQR VRELEQEVQS NKVCASSSSC YEVNSNGANA ILPEVKVRVL QKEVLIIVHC  180
EKQKGIVLKI LSHLENINLS VLNSSVLRFG KSTIDITIIA QMGEGYQMGV DELVETLRLM  240
ILNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-146AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515688.10.0transcription factor bHLH18
TrEMBLA0A1S3VBF61e-179A0A1S3VBF6_VIGRR; transcription factor bHLH18
STRINGXP_007135785.14e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1460568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-22bHLH family protein