PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 259aa    MW: 28763 Da    PI: 8.0245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002102124123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Vradi09g00170.1 102 FSCNYCQRKFYSSQALGGHQNAH 124
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-699129No hitNo description
PROSITE profilePS5015711.427102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDLQRQEPCP SECLNIITFS DTMPCQRSSI DTQRKRNHTE SDDQKHPNDS NPGVLLDLSL  60
SNKDSGDDES KPELNLLNCF HTNFSENSSE SSQGNELDPR VFSCNYCQRK FYSSQALGGH  120
QNAHKRERTL ARRGYKAGAA DFGHTYSTMP FLPSHGLYNK SLGIQVHSMI NKPSYQAPIF  180
GLCRSNGWQR QPLDSQPAIG NFRVGAESES SLADSVPKVG KFSTRVVTEG FGGHCFGSFS  240
HLKSKQEKLQ KLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515964.10.0zinc finger protein 3
TrEMBLA0A1S3VCV90.0A0A1S3VCV9_VIGRR; zinc finger protein 3
STRINGXP_007135804.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-42C2H2 family protein