PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g01350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 249aa    MW: 27431.6 Da    PI: 6.511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g01350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000291131511255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vradi09g01350.1 113 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 151
                      6677888999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.232101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10110162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7111159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-5113155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMAGNPNWWT THPPSLIPPQ YVLGSSSSIP FNSSTQNPDQ PPPSLSQLLF TGLPGEEERV  60
AFSHFQSKKL DEWNEHMLNP SPINPMVDVI KQEVSQSGSF FHQGHDQEFQ QVRKEKLGDR  120
ITALHQLVSP FGKTDTASVL LEAIGYIRFL QGQIEALSSP YLGNGSKNMR NPQSQQVHGE  180
RNSVFPEDPG QLLNDNGLKR KGAPNQDAKD KPKDLRSRGL CLVPVSCTQH VGNENGADYW  240
APAYGSGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g01350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527331e-100BT052733.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-C-2 unknown mRNA.
GenBankBT1495451e-100BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633138.11e-143transcription factor bHLH68 isoform X3
SwissprotQ8S3D13e-58BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2Z6LJG61e-108A0A2Z6LJG6_TRISU; Uncharacterized protein
STRINGGLYMA07G02120.42e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]