PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g01520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 248aa    MW: 28006.6 Da    PI: 4.9108
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g01520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.5e-061571852
                     -HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS
         Homeobox  8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52
                     ++++  eLe+ ++   ++ ++ +  +e+A++           +L+ +qV  WF+Nr 
  Vradi09g01520.1 15 SSDEMLELERIYKDmgEKPLDWKLCQEIARRFsslsngagktSLSGQQVEQWFKNRQ 71
                     778899*******6669999***********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-41571IPR009057Homeodomain-like
PfamPF167194.6E-20101181IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDTSTLTEQP FLKLSSDEML ELERIYKDMG EKPLDWKLCQ EIARRFSSLS NGAGKTSLSG  60
QQVEQWFKNR QRASQNKDSS SPNLVSLSAG LSSSKATDIS DLAFEARSTK DIAWHDVALF  120
LNYRVMCSGE LEVRVRYAGF SKEQDEWVNV KQGVRVRSIP LAPSECQKLQ DGNLILCFLR  180
RVHDPTECTC TFIIQYLHDQ TEEEVSWNRL CIRPTEEESA VHPILAIDPT QSPSPSFSLN  240
PIESLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-401002162135SHH1 SAWADEE
4iur_B6e-401002162135SHH1 SAWADEE
4iut_A6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-401002162135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g01520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-69AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515923.11e-180protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
RefseqXP_014515924.11e-180protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
RefseqXP_022642119.11e-180protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
TrEMBLA0A1S3VCS01e-179A0A1S3VCS0_VIGRR; protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
STRINGXP_007135638.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-36sequence-specific DNA binding transcription factors;sequence-specific DNA binding