PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi09g01810.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 208aa MW: 22141.4 Da PI: 8.486

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi09g01810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.2	2.4e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk+ k+s Vradi09g01810.1 17 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRS 77 57899***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	12	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MQDPTAFQGL KHPQFPEQEQ LKCPRCDSTN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKSTKRSSTS KRSSAPTSSA VSEADPTRIC TNPVEQDSGA LNIGGTFSSL 120 LASSGHFGTL LEGLNPTGSG LKMGEFGQGV SSDLGLNSDS GSNPGLQLQS NGSSDGFLGM 180 QNGESTCWNG GHGWSDLAIY TPRPSFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi09g01810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014515846.1	1e-152	dof zinc finger protein DOF3.1
Swissprot	O82155	6e-44	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A1S3VBX7	1e-150	A0A1S3VBX7_VIGRR; dof zinc finger protein DOF3.1
STRING	XP_007135581.1	1e-121	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-35	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]