PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 635aa    MW: 70472.3 Da    PI: 6.7871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-08519567348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Vradi09g02390.1 519 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 567
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948512571IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-11514570IPR009057Homeodomain-like
SMARTSM007178.8E-8516569IPR001005SANT/Myb domain
SuperFamilySSF466891.14E-14518577IPR009057Homeodomain-like
CDDcd116606.92E-19518568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MSCHGTLVFF QLTGPLLRVV EGDGRLVPAT DDEVMEVGDF LEYENSEMHV VADTGQSLEC  60
ISIERSSSGK LRLECSEGST EADLGKLNAK LQYIEQILQK VKEEEKQRIS CGSPVHSHVN  120
VDSQCSADKC LVTDGNVQSE TPYQEIPSIA SSLNYTHSNQ SGSMDQCSRP SEGVIESGSS  180
ASAVHSNLKP DLSMSDGEIC LDKLSIRELH ELFKVTFGRE TTVKDKQWLK RRIAMSLTNS  240
CDVSATTFVI KDNKIVRKFV EESSGNMNVA SLISSENMTE EEDINFKDSS AVNACGIDDK  300
QVVSEIRLRN QNTEYELEDM TNQTEQRAAK RIRRPTKRYI EELSENESKE HSPRLPVYNK  360
SMELGHVSST SHVRPARNTF SEVRTCGTRF ASLGGSDVEI PCVSWIRRSR PRKDMASLMK  420
FHPSAMNETA KLSNKLIEHS SDAVGEIPDK VFKSRMPATF HQPSSSEPEK EKQCPVIGAI  480
EPRQELRPKR ADPPGHTSDD NIVTVPTAKG GMRRKHHRAW TLVEVIKLVE GVSRCGAGRW  540
SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS FAMTPAPADE GINSRKHGTA PIPEKILLRV  600
RELAEMNSQV PPNISSNKVA AGAGSVHEDR SGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406412RRSRPRK
2406413RRSRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516354.10.0uncharacterized protein LOC106774054 isoform X3
TrEMBLA0A1S3VE040.0A0A1S3VE04_VIGRR; uncharacterized protein LOC106774054 isoform X3
STRINGXP_007135460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-115TRF-like 6