PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02440.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 271aa    MW: 30534.5 Da    PI: 8.3781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-161364148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g+W+ eEde l ++v+ +G g W ++a+       ++R++k+c+ rw++yl
  Vradi09g02440.1 13 KGAWSREEDETLSKYVAIHGEGKWQKVAQNAVmsagLKRCGKSCRQRWLNYL 64
                     79************************************************97 PP
2Myb_DNA-binding47.44.5e-1570114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Vradi09g02440.1  70 RGDISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 114
                      5667899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-22667IPR009057Homeodomain-like
PROSITE profilePS5129416.814864IPR017930Myb domain
SuperFamilySSF466893.37E-2911111IPR009057Homeodomain-like
SMARTSM007173.8E-141266IPR001005SANT/Myb domain
PfamPF002495.1E-151364IPR001005SANT/Myb domain
CDDcd001675.73E-101564No hitNo description
PROSITE profilePS5129424.58665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2368119IPR009057Homeodomain-like
SMARTSM007178.5E-1669117IPR001005SANT/Myb domain
PfamPF002494.0E-1470115IPR001005SANT/Myb domain
CDDcd001672.61E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRRPCCPKE INKGAWSREE DETLSKYVAI HGEGKWQKVA QNAVMSAGLK RCGKSCRQRW  60
LNYLKPGIKR GDISVDEEDM IIRLHRLLGN RWALIAKRLP GRTDNEIKNY WNTNLSKKLQ  120
KHGTPSLSVS SPQNKRHEEE KIKQVHVAPE APRPRRISAV EYSKIVENNR CSTTPSPSNK  180
VEGSSDEASF SDFLIDIDQS QLLIGDDSNS KVPQMEEEHI NKQVGLTNSP SSSSPSDHCH  240
HLLAEKFDPL ETLLDVELKR MASFLGLEND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261011924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641931.10.0transcription factor WER-like isoform X1
TrEMBLA0A3Q0FE530.0A0A3Q0FE53_VIGRR; transcription factor WER-like isoform X1
STRINGXP_007135451.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-53myb domain protein 6