PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g03960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 152aa    MW: 17453.9 Da    PI: 10.0373
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g03960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-2961118159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk++ +p sYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Vradi09g03960.1  61 LDDGYRWRKYGQKAVKNNMHP-SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 118
                      59******************9.9***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-3147118IPR003657WRKY domain
SuperFamilySSF1182902.62E-2554119IPR003657WRKY domain
PROSITE profilePS5081125.63756120IPR003657WRKY domain
SMARTSM007747.0E-3461119IPR003657WRKY domain
PfamPF031065.3E-2362118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MESQDPPNPS PFVFTPTSMM QNPLEPQGLQ DDIDWKRKGG RVKKTTRPRF AFQTRSADDI  60
LDDGYRWRKY GQKAVKNNMH PSYYRCTHHT CNVKKQVQRL SKDTSIVVTT YEGIHNHPCE  120
KLMETLTPLL KQMQFLSRLA SNNNTSPASL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2351117774Probable WRKY transcription factor 4
2lex_A8e-2351117774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g03960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-98AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515390.11e-101probable WRKY transcription factor 24
SwissprotQ8VWQ41e-53WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A1S3VAV82e-99A0A1S3VAV8_VIGRR; probable WRKY transcription factor 24
STRINGXP_007135144.16e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-55WRKY DNA-binding protein 56