PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 243aa    MW: 28110 Da    PI: 5.5639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.5e-2374135159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDg++WrKYGqK++ +++++r+YYrCt++   +C+++k+v+r +e+p + ++tY g+H+++
  Vradi09g05200.1  74 VDDGHHWRKYGQKDILKAKYSRNYYRCTHKydqNCQATKQVQRIQENPPLYKTTYFGHHTCN 135
                      59***************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-2362135IPR003657WRKY domain
PROSITE profilePS5081118.22369132IPR003657WRKY domain
SuperFamilySSF1182901.7E-2369135IPR003657WRKY domain
SMARTSM007741.3E-3474136IPR003657WRKY domain
PfamPF031065.6E-2375134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNEKDESEIR TLQSLAKNVL RSFTNTLFLL DSHLLSPIKS EDSQESCKTF NRRGCYKRKR  60
STQEWEKVSE APSVDDGHHW RKYGQKDILK AKYSRNYYRC THKYDQNCQA TKQVQRIQEN  120
PPLYKTTYFG HHTCNDLLSS EIILHSNDSP SDTSILLSFN NSFPAPTKQE CPFLSSSSSL  180
SSINPSPSLI TEETIPSFYD DYMLSSEPTL NDYSMHNHWD DMSSALSDFD IDDIKRWFDL  240
DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-2073134768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-152AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515427.10.0probable WRKY transcription factor 70
TrEMBLA0A1S3VB371e-179A0A1S3VB37_VIGRR; probable WRKY transcription factor 70
STRINGXP_007134564.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-31WRKY DNA-binding protein 70