PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 64aa    MW: 7417.18 Da    PI: 4.9567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.11.1e-104464121
                     ---SS-EEEEEEE--TT-SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefp 21
                     ldDgy+WrKYGqK+vk+s +p
  Vradi09g05960.1 44 LDDGYKWRKYGQKVVKNSLHP 64
                     59***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-113564IPR003657WRKY domain
SuperFamilySSF1182901.96E-93764IPR003657WRKY domain
PROSITE profilePS5081112.6563964IPR003657WRKY domain
PfamPF031067.2E-74564IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MEGERGVNPS YDLQVSFTNT PQAIHEMGFV QFEENQTRSD VDVLDDGYKW RKYGQKVVKN  60
SLHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150427e-34AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515898.13e-18probable WRKY transcription factor 12
TrEMBLA0A1S3VC176e-17A0A1S3VC17_VIGRR; probable WRKY transcription factor 12
STRINGXP_007134425.11e-16(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72943245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-15WRKY family protein