PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 328aa    MW: 37216.7 Da    PI: 5.0039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.7e-061872093355
                      .TTS-STCHHHHHHHHHHHHHHH CS
              HLH  33 apskKlsKaeiLekAveYIksLq 55 
                      ++s+ l+K++iL k+++Y+k+Lq
  Vradi09g06110.1 187 EDSTVLDKISILGKTIDYVKHLQ 209
                      467779****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-6188220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-7191222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDESWEKWFS DLEMDDDKLH LFNEHDVNSL EEELMKGESS VPYDSDFSIK NNNNMENISC  60
LETNTNSSSE KNQELSSSFE DSTVVSNDVD EAFHAEQKKR STLQTEQHKM SETRDKIRTM  120
MEMGDDEFHL FTNSLEEELM KVESTSGFDI NNKKKNNIDG GSCLKTNTQH ANSGLEKHIC  180
SCTLAFEDST VLDKISILGK TIDYVKHLQN RVKDLQEQKR KTESVKCSKN KGSNVNISEK  240
FPKVDASVSG KDVRIRVICD RRQHIVAKLF SKLESHHLSI VGSSVLPLGS SALNICIICQ  300
VEHFSMAIDD LVNILNEDLL KLCKFQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g06110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-141AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641617.10.0transcription factor bHLH85-like, partial
TrEMBLA0A3Q0FH160.0A0A3Q0FH16_VIGRR; transcription factor bHLH85-like
STRINGXP_007134384.15e-62(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1824835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-14bHLH family protein