PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 147aa    MW: 16970.9 Da    PI: 10.3623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10144755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     ++Er+RR+++ ++f  L   +P +     kK +Ka iL++A+ Y+k+Lq
  Vradi09g06160.1  1 MAERKRRQELTERFIALSATIPGL-----KKTDKAYILREAMIYMKELQ 44
                     58**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.84143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.59E-7147No hitNo description
SMARTSM003535.9E-8149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-13159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAERKRRQEL TERFIALSAT IPGLKKTDKA YILREAMIYM KELQERVIEL ENQNKRKRTA  60
ESRILIKKYS QREEERKCDR SSPPLPQVEA RVLEKEVLIG IHCHKQKDIV LKIMALLQNH  120
HLSLASSSVL PFGTSTLKVT IIAQDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g06160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-175AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515460.24e-99transcription factor bHLH18
TrEMBLA0A1S3VB259e-98A0A1S3VB25_VIGRR; transcription factor bHLH18
STRINGXP_007134377.14e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-35bHLH family protein