PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi09g06530.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 103aa MW: 11313.4 Da PI: 8.4987

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi09g06530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	30.2	5.5e-10	3	87	190	276
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerflealeyysalfdsleaklp 276 +++ ++ +gE++ V l+l ++r l +++ +L ++ +sP vvv+v++e a ++sF ++++l+yys++++sl + + Vradi09g06530.1 3 SFKVVKLVHGESTTVLLSLVVFRHL---GNVIT----LLADLRMVSPSVVVLVDSEgwadmATVAASSFRCSVVSSLDYYSMMLESLYVFTA 87 556667788999999999999999...55555....9**************988663344888*****************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.8E-7	3	87	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MLSFKVVKLV HGESTTVLLS LVVFRHLGNV ITLLADLRMV SPSVVVLVDS EGWADMATVA 60 ASSFRCSVVS SLDYYSMMLE SLYVFTARGG GEWVRRIKMM HL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi09g06530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-88	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014515475.1	3e-67	scarecrow-like protein 15
TrEMBL	A0A1S3VB38	6e-66	A0A1S3VB38_VIGRR; scarecrow-like protein 15
STRING	XP_007156910.1	2e-44	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	5e-23	GRAS family protein