PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 470aa    MW: 51037.6 Da    PI: 6.5726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09334381455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vradi09g06910.1 334 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 381
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-10328385No hitNo description
SuperFamilySSF474597.72E-16328392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16330392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6334381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MENQFFINSG VSQTQHPLHF EPSPPPPPSS SSVPSWQSLS PTMGIQPTLL NCASEQTQDC  60
FYNPNWEKST DHALHFDSSA LSSMVSSPAA SSNPSSNISN DNFIIRELVG RLGAIGSSDE  120
IPQHSPHPLV VASSYMNNGS GSPNTSCYTT PLSSPPKVKT VQSLVNERLA NFGGKSMTLN  180
SSVAEFSADP GFAERAAKFS CFGSRSFNGR NVQLGVNNGE LAQRSASAVE NGGKLSRISS  240
SPLLKTLGSQ MGTPENKNSA IQDQEKVEGV EVSEDSNSKR TKPNEGEGNE NGQVKVEEES  300
KAVEEKQNKS NSKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC  360
NKVTGKALML DEIINYVQSL QRQVEVFQSN NSLATHPNPT FPLDSSAQAF YGHQHQQNPV  420
IHNNIPNRTV THCSVDPLDT SLCQNLAMQL PPLNGFNEVA SQVQIMYPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g06910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516761.10.0transcription factor bHLH62-like
TrEMBLA0A1S3VEH70.0A0A1S3VEH7_VIGRR; transcription factor bHLH62-like
STRINGXP_007134164.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-75bHLH family protein