PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g07290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 392aa    MW: 42203.5 Da    PI: 6.9371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g07290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.3e-133573140
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c
  Vradi09g07290.1 35 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSC 73
                     79******************************.******9 PP
2Myb_DNA-binding491.4e-15132170747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Vradi09g07290.1 132 EEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 170
                      9***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0723085IPR017930Myb domain
SuperFamilySSF466892.02E-213282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-143473IPR009057Homeodomain-like
SMARTSM007171.2E-73483IPR001005SANT/Myb domain
PfamPF002491.0E-113573IPR001005SANT/Myb domain
CDDcd001678.03E-113773No hitNo description
PROSITE profilePS5129417.7119175IPR017930Myb domain
SuperFamilySSF466892.02E-21126167IPR009057Homeodomain-like
SMARTSM007174.9E-10127173IPR001005SANT/Myb domain
CDDcd001672.32E-11132171No hitNo description
Gene3DG3DSA:1.10.10.604.6E-18132172IPR009057Homeodomain-like
PfamPF002491.1E-12132170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEPEETAATA VDGSGDEGLL LLEGSDVGGG KDRVKGPWSP EEDAILSRLV SKFGARNWSL  60
IARGISGRSG KSCPAQSSTM LAFLRASNWG TCFAPSHQDY QILHSSVNPF AIRSYVFFLK  120
NSSKCPAKPA YEEDRIIVAA HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVELDK  180
IKLESGNFME DASLEKAKAS SEDTLSCGDV SLKSSEGRDV SSVDIMDDKS DGKAQAEGQL  240
HHKVKDPPTL FRPVARVSAF NVYHSNDVIQ PSTSIQRPVP KQGPILQSSR PDMEFCRMVE  300
GICGDQAIPH QCGHGCCASP NGRKSESSLL GPEFIEFSEP PSFPNFELAA IAADISNLAW  360
LKSGLENSSV KMMGNTSGSA MPNGSRIHIG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28291741107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g07290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515157.10.0transcription factor MYB1
TrEMBLA0A1S3VAC10.0A0A1S3VAC1_VIGRR; transcription factor MYB1
STRINGGLYMA03G15810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.16e-90myb domain protein 1