PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g07650.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 550aa    MW: 60920.6 Da    PI: 8.9873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g07650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-1459104248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + WT+ Ede l++av+ + g++Wk+Ia+ ++  +++ qc +rw k+l
  Vradi09g07650.1  59 DGWTEKEDETLKNAVEVFNGKNWKKIAEFFP-DKSEVQCLHRWKKVL 104
                      56*****************************.************986 PP
2Myb_DNA-binding55.99.6e-18110156148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd++++++v  +G+  W++I++ ++ gR +kqc++rw ++l
  Vradi09g07650.1 110 KGHWTKEEDDKIIELVSIHGPTKWSLISQSLP-GRIGKQCRERWCNHL 156
                      789*****************************.*************96 PP
3Myb_DNA-binding46.77.1e-15162204145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT eE++ l +a+  +G++ W+ Ia+ +  gRt++ +k++w+
  Vradi09g07650.1 162 KDPWTLEEELALMKAHCTHGNK-WAEIAKVLC-GRTDNAIKNHWN 204
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.38253104IPR017930Myb domain
SuperFamilySSF466893.16E-1456111IPR009057Homeodomain-like
SMARTSM007177.4E-1357106IPR001005SANT/Myb domain
PfamPF002491.2E-1260104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1961116IPR009057Homeodomain-like
CDDcd001671.67E-1261104No hitNo description
PROSITE profilePS5129430.446105160IPR017930Myb domain
SuperFamilySSF466895.62E-30107203IPR009057Homeodomain-like
SMARTSM007171.9E-16109158IPR001005SANT/Myb domain
PfamPF139212.2E-17113171No hitNo description
CDDcd001671.73E-14113156No hitNo description
Gene3DG3DSA:1.10.10.607.2E-26117163IPR009057Homeodomain-like
PROSITE profilePS5129419.482161211IPR017930Myb domain
SMARTSM007171.5E-13161209IPR001005SANT/Myb domain
CDDcd001673.32E-10164204No hitNo description
Gene3DG3DSA:1.10.10.602.3E-21164210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTEEKSEQLC LKNKQTYAPS SSSVSDGNDS AIPSSSRKTG SALPCNRWRT TGPVRRVKDG  60
WTEKEDETLK NAVEVFNGKN WKKIAEFFPD KSEVQCLHRW KKVLNPELVK GHWTKEEDDK  120
IIELVSIHGP TKWSLISQSL PGRIGKQCRE RWCNHLSPDI KKDPWTLEEE LALMKAHCTH  180
GNKWAEIAKV LCGRTDNAIK NHWNGSLKKK KDFYLANGRL PPIPKSSMEV AIKDTVKHST  240
TNTIHVYSNK GLDATVASSS KATDITKLDN SDKNQLESSG IVGEVGDSSS VPPKKSADSD  300
CVHCHRLFHK GLCCSNLESG SGDNFKINRE PKFVNPGLNA NQRIDHCLNY SDMNGDRSTR  360
IFYSKESRTF GSFCHESSRL DNPHPSESLN FNMSSGLQNE DISSPMKSSA GFVTPPHVKG  420
IESCSESIES ILRKAAKTFP TPSIIRKRRN GGELPATPRK LANAVNSHVC NEEVRTNDIS  480
CSGVVGLSVS PASHGHGSNI IQNNALNMTP PYRLRSKQTA IKSLTKQLDS AFYMERSASD  540
MEKSTEIVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-60582106158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-60582106158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g07650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641977.10.0transcription factor MYB3R-3-like
TrEMBLA0A3Q0FI830.0A0A3Q0FI83_VIGRR; transcription factor MYB3R-3-like
STRINGXP_007134020.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-111myb domain protein 3r-3