PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g08220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 212aa    MW: 23977.3 Da    PI: 9.2574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g08220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-1092134251
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++ k + +W A I++      +k+++lg+  + eeAa ++++a+ 
  Vradi09g08220.1  92 FMRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVESQEEAAHLYDRAAF 134
                      579**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-893137IPR016177DNA-binding domain
PfamPF008471.2E-494135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-794139IPR001471AP2/ERF domain
SMARTSM003802.0E-494149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSVGNSSF VTPLPLHCEH LTATEASGQQ VQNTIVKDEP GSSNASGSSL  60
SKEDSSQQSL GPPVKRRKQH LRKHAHDQEP CFMRGVYYKN MKWQAAIKVD KKQIHLGTVE  120
SQEEAAHLYD RAAFMCGREP NFELQEEEKM ELCKLKWEDF LAMTRQAIIS KKHKRKHSPE  180
AKDVNMEASV HSDDRKVVNI NQQTPVSKDL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178PPVKRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g08220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-93AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516028.11e-158ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_014516029.11e-158ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP91e-42ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1S3VCD91e-157A0A1S3VCD9_VIGRR; ethylene-responsive transcription factor-like protein At4g13040 isoform X1
STRINGGLYMA18G33460.15e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.18e-45ERF family protein