PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g08640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 78aa    MW: 8179.59 Da    PI: 10.073
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g08640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.99.3e-1822661962
            NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrs 62
                     h+lPlarikki+k+  e+vkmis +aP+++skacelf+ +++ r 
  Vradi09g08640.1 22 HSLPLARIKKIMKKsGEHVKMISGDAPIIFSKACELFVGDFAQRG 66
                     89**********851689********************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.47E-121763IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-182069IPR009072Histone-fold
PfamPF008082.2E-122368IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MKQAGAYSGL LCGGISGRTG LHSLPLARIK KIMKKSGEHV KMISGDAPII FSKACELFVG  60
DFAQRGLNIG SYSHESI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g08640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-79AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237975.12e-33nuclear transcription factor Y subunit C-2
TrEMBLA0A151RNI35e-32A0A151RNI3_CAJCA; Nuclear transcription factor Y subunit C-1
STRINGGLYMA13G35980.16e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.35e-15nuclear factor Y, subunit C3