PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g09040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 88aa    MW: 9329.77 Da    PI: 7.3431
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g09040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.76.1e-1422661962
            NF-YC 19 helPlarikkil.kadedvkmisaeaPvllskacelfileltlrs 62
                     h+lPlarik+i+ k+ edvkmis ++P+++ska el + +++ r 
  Vradi09g09040.1 22 HSLPLARIKNIMnKSGEDVKMISGDVPIIFSKAGELCVGDFAQRG 66
                     89**********7789********************999887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-71759IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.0E-132072IPR009072Histone-fold
PfamPF008085.0E-72368IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MKEAGAYSGL LCGGISGRTG LHSLPLARIK NIMNKSGEDV KMISGDVPII FSKAGELCVG  60
DFAQRGLNIG SYNHESICLF DYFGFQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g09040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-75AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237975.11e-28nuclear transcription factor Y subunit C-2
TrEMBLA0A151RNI33e-27A0A151RNI3_CAJCA; Nuclear transcription factor Y subunit C-1
STRINGGLYMA13G35980.16e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-11nuclear factor Y, subunit C3