PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g00910.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 294aa MW: 32244.6 Da PI: 10.1216

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g00910.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Vradi10g00910.1 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 92 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	29	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-34	34	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDTAQWAQGI GVVKPMEGSK PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSTPSSAPSP ASSSAPTKKL PDLTPPNFPQ 120 SASQDPKIHQ GQDLNLAYPP AEDYNTVSKF IEVPYSTELD KGSLQNATSS STPSQLSAME 180 LLKTGIASSR GLNSFMPMYN STGFPLPDFK PPPGLNFSLE GFENGYGGLQ GIQEGPTGAR 240 ILFPVEDLKQ QDLRARFAAT TARKRIPINT IVSNSPLLLS MKLRRVTLLW SNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g00910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014516948.1	0.0	dof zinc finger protein 1 isoform X1
TrEMBL	A0A1S3VF18	0.0	A0A1S3VF18_VIGRR; dof zinc finger protein 1 isoform X1
STRING	XP_007136465.1	1e-169	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-52	Dof family protein