PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03470.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 229aa    MW: 25780.2 Da    PI: 6.7256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-083074345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W+++a++++ g+t  +++  + 
  Vradi10g03470.1 30 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVMDVVKQYK 74
                     8********************************.***998887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1212377IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-42475IPR009057Homeodomain-like
SMARTSM007172.5E-92779IPR001005SANT/Myb domain
SuperFamilySSF466894.68E-122984IPR009057Homeodomain-like
CDDcd001671.83E-83076No hitNo description
PfamPF002499.4E-73074IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKWEMEILPP ASPYMYSSNW LLDDNRTNTK WTPAENKLFE NALAVYDKDT PDRWHKVAEM  60
IPGKTVMDVV KQYKELEADV CNIEAGLIPI PGYSTTTSPF TLDWVNTPGY DGFKGLTAKR  120
SSSGRPPEQE RKKGVPWTEE EHNSLHEASF VGGWLFLLGL KKYGKGIAMA LNPAHEQVFV  180
SPYGLNSYGF KVQGQSLHRS PLHESSYLGP QTPNMVFQMQ PSQHYSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-18311031183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518898.11e-108transcription factor DIVARICATA
SwissprotQ8S9H73e-62DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3VKK11e-107A0A1S3VKK1_VIGRR; transcription factor DIVARICATA
STRINGXP_007146740.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4073522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-54MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]