PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03630.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 267aa    MW: 29283.7 Da    PI: 6.0812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS75.11.3e-239822181207
             GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                      +k+fs +s ++ fs +t+Nq Il+ +  ++ +H+iDfdi+  +Q+ +L++++++++ ++  lRiT+v ++e   + e   ++e+La+fA el++
  Vradi10g03630.1  98 FKAFSGISSVPMFSIFTTNQVILDHA-ACSFMHVIDFDIGLRGQYSSLMKEITEKATKSMLLRITTVIPEE--YAVESTLVRENLAHFALELRI 188
                      688*********************86.5899**************************************66..8999999************** PP

             GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlv 207
                      +++ +++  +++e+l++++ ++  g ++ V l+
  Vradi10g03630.1 189 RVQVDFVPLRTFETLSFKAVKLVDGKSTTVLLS 221
                      ******9999***********999888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.5241266IPR005202Transcription factor GRAS
PfamPF035144.5E-2198221IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRLLVPSSPQ ANPKPTNNLL HTIALPNLNT TGLCYEPTSV LDLCRSPSPG SEKPTDHSIV  60
VMDSQDCLDL DDHVLHNLDW DSIMKYLGLH DDSGAPLFKA FSGISSVPMF SIFTTNQVIL  120
DHAACSFMHV IDFDIGLRGQ YSSLMKEITE KATKSMLLRI TTVIPEEYAV ESTLVRENLA  180
HFALELRIRV QVDFVPLRTF ETLSFKAVKL VDGKSTTVLL SPQGVGGYGY NSCLVVPMRR  240
REQFGVLLDD VGVTGCANGW GRRGVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-138AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506275.15e-75scarecrow-like protein 15
TrEMBLA0A1S3UJS11e-73A0A1S3UJS1_VIGRR; scarecrow-like protein 15
STRINGXP_007156910.18e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.13e-42GRAS family protein