PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g04300.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 890aa    MW: 98408.1 Da    PI: 5.9562
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g04300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.1e-23173274199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Vradi10g04300.1 173 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WN 262
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Vradi10g04300.1 263 EKNQLLLGIRRA 274
                      99999****997 PP
2Auxin_resp118.36.2e-39299382183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Vradi10g04300.1 299 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVK 382
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-49157302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-41166288IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-21172273No hitNo description
SMARTSM010196.4E-24173275IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308173275IPR003340B3 DNA binding domain
PfamPF023622.6E-21173274IPR003340B3 DNA binding domain
PfamPF065072.2E-34299382IPR010525Auxin response factor
SuperFamilySSF542773.38E-7758837No hitNo description
PfamPF023093.1E-7760847IPR033389AUX/IAA domain
PROSITE profilePS5174524.037763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MAISGNVPPL LQFTPIGAGF VFWGSRVVVN LLGCCGLWIW ALFDCFKIVG FYMRTLWSEC  60
IGIMVEDEGV VGDACLCNGL KQIEGLGQQG LEVGEKKCLN SELWHACAGP LVSLPTAGTR  120
VVYFPQGHSE QADVETDEVY AQMTLQPLTP QEQKDTFLPM ELGIPSKQPS NYFCKTLTAS  180
DTSTHGGFSV PRRAAEKVFP PLDFSQQPPA QELIARDLHD VEWKFRHIFR GQPKRHLLTT  240
GWSIFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV MPSSVLSSDS MHIGLLAAAA  300
HAAATNSCFT VFYNPRASPS EFVIPLSKYI KAVYHTRISV GMRFRMLFET EESSVRRYMG  360
TITGISDLDT VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSLFPLRLK  420
RPWHPGSSSL HDGRDEASNG LMWLRGGAVD QGLNSLNFQG AGMLPWMQQR MDPTLLGSDQ  480
NQQYQAMLAA GLQNLGSGYL MKQQMMNFQQ PFHYLQQSGN SNSPLQLQPQ QSVQQSVSSN  540
MLQPQAHVLT ENLSQHLLQK PHNNQEVQAQ QQQQHSYQES LLIPSDQLHQ RQHSGVPSPS  600
YSKPDFLDSS MKFPVSVSPG QNMLSSLCPE GSGNLLNLSR SGPSLLSEQL PQQQWTQKYA  660
PVQVNAYGST VSQTQYSGKD SAMVLPHLNS DAQNSTLFGV NIDSSGLLLP TTVPGYSTSS  720
ADTNSSTMPL GESGFQGSLF GCMQDSSELL QSAGHVDPQN QTQTFVKVYK SGSVGRSLDI  780
SRFSSYHELR EELAQMFGIE GKLEDPPRSG WQLVFVDREN DVLLLGDDPW ESFVNNVWYI  840
KILSPEDIQK MGEQAVESLA LGSGQRLNGT GAESQDIVSG PPSIGSLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1349540347388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g04300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518560.10.0auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A1S3VJU80.0A0A1S3VJU8_VIGRR; Auxin response factor
STRINGXP_007146950.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]