PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 288aa    MW: 32508.2 Da    PI: 4.2565
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57384.31.7e-26107169264
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkK 64 
                      lfqrlw++eDei lLqG++d+++++g+s ++d+  fy+++k++++++++k+qlveKirrLKkK
  Vradi10g05430.1 107 LFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKK 169
                      79************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.9E-22108169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASQQHDAVF REEDMDDDDE SQEDEEFEEE DDVLAADDEE NESSPSTALA VTVAVPGSAI  60
SNGGGTPLST PTATTIVIGD SSDPKRRRLE PIEEKKPPPP LDDSRRLFQR LWTDEDEIEL  120
LQGFLDYTSQ RGSSHHNDTA LFYDQIKSKL QLDFNKNQLV EKIRRLKKKE LVGAMGGGAF  180
GGRGVSLNLN PIPLMNLSYG GGELVDEKWR KQQILELEVY SKRLELVQDQ IKAAMEELRS  240
RVQAQWNGLF IYAASDWGWK LFEFWMLNPS QMGQFVSLIT ISGQFWF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553753.14e-86probable transcription factor At3g04930
RefseqXP_028218581.14e-86probable transcription factor At3g04930
SwissprotQ9CAV72e-38STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A445FL009e-85A0A445FL00_GLYSO; Putative transcription factor
TrEMBLI1NC709e-85I1NC70_SOYBN; Uncharacterized protein
STRINGGLYMA19G43180.11e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-32DNA-binding storekeeper protein-related transcriptional regulator