PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g06520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 147aa    MW: 17240.5 Da    PI: 11.3206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g06520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14100146353
              AP2   3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      y+ Vr+++ +g+WvAe   ++  ++ r+r +lg f+tae+Aa a+++ + kl
  Vradi10g06520.1 100 YRRVRQRP-WGKWVAE---FCLpRN-RTRLWLGVFDTAEDAAMAYDREAFKL 146
                      999*****.*******...766655.7*******************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-2198146No hitNo description
SuperFamilySSF541711.24E-1499146IPR016177DNA-binding domain
SMARTSM003803.5E-1399146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2099146IPR001471AP2/ERF domain
PROSITE profilePS5103217.68899146IPR001471AP2/ERF domain
PRINTSPR003675.1E-10100111IPR001471AP2/ERF domain
PfamPF008476.1E-9100144IPR001471AP2/ERF domain
PRINTSPR003675.1E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQFRHQFGAT NSPFPHPSFQ NPQQIISFSS QQQNLSFPPN MVRDSSLPYH HHHQQHPQQL  60
LQHWRDALNL SPRGMFTHLG PDGRPLFRAP TQPINTTKLY RRVRQRPWGK WVAEFCLPRN  120
RTRLWLGVFD TAEDAAMAYD REAFKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1498146453ATERF1
3gcc_A1e-1498146453ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g06520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491721.16e-78ethylene-responsive transcription factor ERF053
SwissprotQ9SKT14e-30ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A1S3TD861e-76A0A1S3TD86_VIGRR; ethylene-responsive transcription factor ERF053
STRINGXP_007149866.14e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]