PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g08030.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 218aa MW: 24328.5 Da PI: 8.9288

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g08030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5.2e-34	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Vradi10g08030.1 2 PRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQIMNVKGLTIAHVKSHLQMYRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	1	58	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.562	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-16	2	57	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-25	2	56	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-9	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MPRLRWTPDL HRCFVHAVQR LGGEDRATPK LVLQIMNVKG LTIAHVKSHL QMYRSMKQEQ 60 KSEGTKKKAV APEFLASTFS TLGSRYTQQN PHQRTCTEQL LPTHAQRNDC ESGKHGGKSI 120 NEEKMKSYII FEGLLSDQTV QENKIGPEKV SLWGDTGYQS DRERFHDRIA AAIGGGEIMC 180 ETTLSLSMTS RATSHSFFNR SHSGPDANDV SLELTLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g08030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	2e-68	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517413.1	1e-164	protein PHR1-LIKE 1-like
TrEMBL	A0A1S3VGD0	1e-163	A0A1S3VGD0_VIGRR; protein PHR1-LIKE 1-like
STRING	XP_007147718.1	1e-110	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-30	G2-like family protein