PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g09200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 253aa    MW: 28504.2 Da    PI: 8.9534
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g09200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.57e-321022137112
              TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaaks 93 
                       hsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++       + +++ e  + s +  ++ +  ++a  +
  Vradi10g09200.1 102 VHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLnnpfpdtPKQPSDEKRPTSGQRGVQPQAFDDADGD 195
                      6**********************************************************66665442222222233333333333333333333 PP

              TCP  94 aa.kskksqksaasalnlak 112
                      ++  ++++++s++  l+l+k
  Vradi10g09200.1 196 TNfLHQSQNQSQN--LSLSK 213
                      3323333333333..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.5694157IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-32103207IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCSQICEVWE RQPQALFPFP FLFSRHQHLP QNPIQQCSKT GKSYKQANTR RSQKEFGADP  60
RPICKICCFS LKTKREDLDQ RLIPFKVLSV KQHGQTQILS AVHSKVMTSK GLRDRRVRLS  120
VTTAIQFYDL QDRLGYDQPS KAVEWLINAA SDAISELPSL NNPFPDTPKQ PSDEKRPTSG  180
QRGVQPQAFD DADGDTNFLH QSQNQSQNLS LSKGTLQSNS PSFLPHLQRD CGVCFLQEQQ  240
VVSPAWLLHN GG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-22104158155Putative transcription factor PCF6
5zkt_B1e-22104158155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g09200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-31TCP family protein