PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g09690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26402.2 Da    PI: 9.7499
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g09690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-312473150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Vradi10g09690.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                     79***********************************************8 PP
2K-box82.68.9e-2811418034100
            K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      e+ +++Ge+L+s++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  Vradi10g09690.1 114 EKMQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 180
                      5689************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-331789IPR002100Transcription factor, MADS-box
CDDcd002654.34E-461791No hitNo description
PRINTSPR004044.0E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003198.4E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-335374IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.53294184IPR002487Transcription factor, K-box
PfamPF014863.7E-20114178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAFPNPSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKET IERYKKACSD SSAGSASEAN AQVLLVPCYV FLSEKMQMMG  120
ESLGSMTTKD LKNLESKLEK GISRIRSKKN ELLFAEIEYM QKREIDLHNN NQLLRAKIAE  180
SERSHNMGVL PGGTSYDSMQ SQQPFDSRGY FQVTGLQPNS QYARQDQMSL QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-2216104185Myocyte-specific enhancer factor 2B
1tqe_Q7e-2216104185Myocyte-specific enhancer factor 2B
1tqe_R7e-2216104185Myocyte-specific enhancer factor 2B
1tqe_S7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_A7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_B7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_C7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_D7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_E7e-2216104185Myocyte-specific enhancer factor 2B
6c9l_F7e-2216104185Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g09690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828331e-142AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517920.11e-158floral homeotic protein AGAMOUS isoform X2
RefseqXP_017434001.11e-158PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_017434002.11e-158PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_017434003.11e-158PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_022642888.11e-158floral homeotic protein AGAMOUS isoform X1
RefseqXP_022642889.11e-158floral homeotic protein AGAMOUS isoform X1
SwissprotQ408851e-115AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0S3S3731e-156A0A0S3S373_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VI101e-156A0A1S3VI10_VIGRR; floral homeotic protein AGAMOUS isoform X1
STRINGXP_007147970.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]