PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g10130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 259aa    MW: 29107.5 Da    PI: 10.7041
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g10130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1345128987
         trihelix   9 aLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + ss++p++++l+a
  Vradi10g10130.1  45 TLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDA 128
                      6777777778899********************99999****************************99999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-2339129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLAAGGDGAE EGLLGSFNKV EIWYSSRLGR ISHLVVCRSN EASSTLVDAW GRRYLELNRG  60
NLRQKDWQDV ADAVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKARVS SSNGTLSSSW  120
PFYERLDALI GPNFNAKKPP SSSPSPSPPV ALPLLPHRKN PSSSPAIAKL RQMVDLEKQR  180
MQFAKDLEVQ RMQMFMDTQV QLERIKRGKR SGSNVNTELV QIALWFAWSS IYNGLRMSKL  240
VPIAVQYRDI GTSLNLKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g10130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542983.11e-74trihelix transcription factor ASIL2
RefseqXP_028189803.11e-74trihelix transcription factor ASIL2-like
TrEMBLA0A2P5QSH02e-90A0A2P5QSH0_GOSBA; Uncharacterized protein
STRINGGLYMA13G30280.14e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-34sequence-specific DNA binding transcription factors