PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g10750.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 293aa MW: 31707.2 Da PI: 7.3089

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g10750.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	54	107	3	56
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrr 56 +++lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+ Vradi10g10750.1 54 QQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCS 107 7899************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.4E-32	55	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.857	57	111	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-24	58	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSGNCEKMVV IPSTTNQWPQ VDDHKVLMAS FGGSNNSKVM EKPDQELVQQ QLQQQTLKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCSSDV NLPLFPRFGS 120 RISSSGFDLQ LNNALGLGFS SGVVSNEPSE NNSFRNGFGS NNALLSSYNS IFGSSSSSTS 180 TTPALSSLXS STLLQQKFIG SGLKDGADSN TFQHGLGLTP LEQXQMXSDN SEAGMVSLKD 240 VKVELGQNSR LEWNGACQNQ IQHVGMYDPS LYWXNSATAL GVWNDQAANI GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g10750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517614.1	1e-173	dof zinc finger protein DOF1.4
TrEMBL	A0A1S3VHM3	1e-171	A0A1S3VHM3_VIGRR; dof zinc finger protein DOF1.4
STRING	XP_007148145.1	1e-172	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	6e-30	Dof family protein