PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g10760.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 253aa MW: 27322.2 Da PI: 9.1945

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g10760.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Vradi10g10760.1 35 PQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 95 68899***************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-25	40	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEQGGGEGGD MNKLPQDSSM KEMQQGDAQP QVQAPQQPQK CPRCDSLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRAKSSNPS SSENSSSRSL PQQQQSQDVV 120 VQTQAPPLTT VVRAKDPSSV LASPFYQSGG YLSSLAAMHS LNPSSHPFDQ SLNSDALRSS 180 NLGLLSGFNV QRPTGSIGTI RPPQLYQMGS GQREVASLYD QGLVNPSSSM ANTNTNSSGV 240 SHHDWSQSFI SI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g10760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517899.1	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A1S3VIH3	0.0	A0A1S3VIH3_VIGRR; dof zinc finger protein DOF3.4-like
STRING	GLYMA13G31110.1	1e-132	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-33	TARGET OF MONOPTEROS 6