PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g11920.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 351aa    MW: 39264.7 Da    PI: 8.469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g11920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13175222355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +Av+Y+++Lq
  Vradi10g11920.1 175 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAVKYLQQLQ 222
                      5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.202172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17176249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-12177226No hitNo description
SMARTSM003531.0E-14178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRSFHMEISS IRGLPELGII EDPNFLHQWQ LNPANTSSLT GAAFGESLQK LSFSGNSNFN  60
PKASMEASPN GNERPTKHLR NNSWNGKKSQ HQTPETQYAS CSNLLSFVNS NYINELGLGK  120
PKVEMACPKI DTKIDNSTLA EMLVSQGTLV NQNYHFKANQ EAIKIETRPK LSQPQDHIIA  180
ERKRREKLSQ RFIALSALVP GLKKMDKASV LGEAVKYLQQ LQEKVSTLEE EQNRKRTVES  240
VVTVKKSQLS NDAEDSSSSD TGGTLDEALP EIEARFCERN VLIRIHCEKK KGIIEKTISE  300
IEKLHLKVTN SSALSFGSFI LDITIIAQMD MEFCMTVKDL VRSLRSTFSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14173232564Transcription factor MYC2
5gnj_B1e-14173232564Transcription factor MYC2
5gnj_E1e-14173232564Transcription factor MYC2
5gnj_F1e-14173232564Transcription factor MYC2
5gnj_G1e-14173232564Transcription factor MYC2
5gnj_I1e-14173232564Transcription factor MYC2
5gnj_M1e-14173232564Transcription factor MYC2
5gnj_N1e-14173232564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g11920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518169.10.0transcription factor bHLH25
RefseqXP_022642660.10.0transcription factor bHLH25
SwissprotQ9T0725e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S3VJ900.0A0A1S3VJ90_VIGRR; transcription factor bHLH25
STRINGXP_007148316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-59bHLH family protein