PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g12470.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 768aa MW: 86693.6 Da PI: 4.8397

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g12470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	119.3	1.9e-37	1	72	47	118
CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n++fqrr+yw+Le ++ +iv+vhylevk Vradi10g12470.1 1 LRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEHFQRRSYWMLEPDMMHIVFVHYLEVK 72 59*******************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	1.4E-29	1	72	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	56.229	1	77	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.6E-31	2	71	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	6.7E-5	425	500	IPR002909	IPT domain
SuperFamily	SSF81296	6.8E-15	425	510	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	13.973	596	667	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.3E-11	608	671	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.84E-13	609	671	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.73E-9	614	670	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
LRYFRKDGHN WRKKKDGKTV KEAHEKLKVG SVDVLHCYYA HGEDNEHFQR RSYWMLEPDM 60 MHIVFVHYLE VKGNKNIVVN TEGDEVPLDS QKVTSLSTDS ISPSSSLMSL REDADSEDVY 120 QASSGLRPLH ESQHMGNGPL PEKIDAGLNS SYHTSPFSGD HGQSSISGTD YIPVVHGDKF 180 RGNDTPYFDG EKTHGMAPWD TVLQSTAKLH NDPSLASFPS IPPSSMGNVL EQEHTIYGDL 240 LTGKRDLTEE EESSRSFQPS WQIPFEDNSG DMPMSSQNQP FGLHYVSDYG TGLLGYGARN 300 ASSEIAPILY SFNGDPKEQL LQKNYPQEHA DGQSQHTLKS NSANKVPDEE SINYGLTVKR 360 TLLDKDESLK KVDSFSRWVT KELGEVADLN MQSTPGISWS TDECQHVIDD SSLSPSLSQD 420 QLFSINDFSP KWAYAELDIE VLIIGSFLKS QPEVTTCNWS CMFGEVEVPA EVLADGILCC 480 QAPRHKVGRV PFYVTCSNRL ACSEVREFDF REGFARNVDF AEFFGSSTEM RIHLRLEKFL 540 TLKPVNPSNH SFEGDMEKRN LIFKLISLRE EEEYSIKDEP TKEVDISQHM VRELLFHRQV 600 KEKLYSWLLH KVTENGKGPN VLDEGGQGLL HLAAFLGYDW AINPIIAAGV NINFRDVNGW 660 TALHWAAFCG SQQNDSQKED DYDFLKEGRK QKEEKIQKAL SRVKSMVQYP EARAQYRRLL 720 NVVEDFRQTK GTNEGLTSSE GTVDGMEDLI DIDMLLDDDN FIPIAFN*

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

LRYFRKDGHN WRKKKDGKTV KEAHEKLKVG SVDVLHCYYA HGEDNEHFQR RSYWMLEPDM  60
MHIVFVHYLE VKGNKNIVVN TEGDEVPLDS QKVTSLSTDS ISPSSSLMSL REDADSEDVY  120
QASSGLRPLH ESQHMGNGPL PEKIDAGLNS SYHTSPFSGD HGQSSISGTD YIPVVHGDKF  180
RGNDTPYFDG EKTHGMAPWD TVLQSTAKLH NDPSLASFPS IPPSSMGNVL EQEHTIYGDL  240
LTGKRDLTEE EESSRSFQPS WQIPFEDNSG DMPMSSQNQP FGLHYVSDYG TGLLGYGARN  300
ASSEIAPILY SFNGDPKEQL LQKNYPQEHA DGQSQHTLKS NSANKVPDEE SINYGLTVKR  360
TLLDKDESLK KVDSFSRWVT KELGEVADLN MQSTPGISWS TDECQHVIDD SSLSPSLSQD  420
QLFSINDFSP KWAYAELDIE VLIIGSFLKS QPEVTTCNWS CMFGEVEVPA EVLADGILCC  480
QAPRHKVGRV PFYVTCSNRL ACSEVREFDF REGFARNVDF AEFFGSSTEM RIHLRLEKFL  540
TLKPVNPSNH SFEGDMEKRN LIFKLISLRE EEEYSIKDEP TKEVDISQHM VRELLFHRQV  600
KEKLYSWLLH KVTENGKGPN VLDEGGQGLL HLAAFLGYDW AINPIIAAGV NINFRDVNGW  660
TALHWAAFCG SQQNDSQKED DYDFLKEGRK QKEEKIQKAL SRVKSMVQYP EARAQYRRLL  720
NVVEDFRQTK GTNEGLTSSE GTVDGMEDLI DIDMLLDDDN FIPIAFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g12470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014518503.1	0.0	calmodulin-binding transcription activator 2
TrEMBL	A0A1S3VJF9	0.0	A0A1S3VJF9_VIGRR; calmodulin-binding transcription activator 2
STRING	GLYMA15G05900.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-175	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains