PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g00410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 481aa    MW: 52753.4 Da    PI: 9.8024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g00410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.9e-211764249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i  ks  qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k + +
  Vradi11g00410.1 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSF 64
                     57789999*********************************9886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.679868IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-28867IPR002100Transcription factor, MADS-box
CDDcd002653.54E-29982No hitNo description
SuperFamilySSF554552.62E-24984IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-161030IPR002100Transcription factor, MADS-box
PfamPF003197.2E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-164566IPR002100Transcription factor, MADS-box
PfamPF062198.4E-97149423IPR010410Protein of unknown function DUF1005
PfamPF062193.2E-23433479IPR010410Protein of unknown function DUF1005
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MMKKKCSSGR QRIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPADK  60
AFSFGHPQVE SVVDSYVTSN SSPEYNRSGN GHQLVEAHRS ANIRNLNAQL TQIVNELEIE  120
KRRGEELDRA WKTRLSQFWC VIVGSPTESP ASSKHSSFSG KVHPSTSSLF CKIQLKGVDC  180
EESLSGSNVC SVPLITELDP HPRSLAASFD FSKPKIMKAS KKAQIKILVY KGAATPSCIF  240
TSAKLIGKIS IPLDLTLAES RACTFHNGWL PLTKTTNQVQ LLHLTVRADP DPRFVFRFDG  300
EPECSPQVFQ IKGDVKQPVF TCKFSFRDKN PAHFPSPNAN STAERKGWSI TVHDLSGSPV  360
AAASMATPFV PSPGSQRVSR SNPGAWLIIR PDGDGTWKPW GRLEAWREPN NSNAVGYRFQ  420
ILPATADPVT LAGKPEVEVG VQHVTCTEDA AAFVALAAAL DLSMDACKLF SHKLRKELRQ  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g00410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521034.10.0uncharacterized protein LOC106777793
TrEMBLA0A1S3VSI80.0A0A1S3VSI8_VIGRR; uncharacterized protein LOC106777793
STRINGXP_007157186.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-41AGAMOUS-like 62