PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 181aa    MW: 19747.3 Da    PI: 7.1343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.4e-092283056
              AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
                     r++lg+++tae Aa a+++a+ kl+ge
  Vradi11g01710.1  2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28
                     79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.144135IPR001471AP2/ERF domain
SMARTSM003803.4E-5241IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-11235IPR016177DNA-binding domain
PfamPF008471.4E-5228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP TKLGFGDSAR LNALKSSVDA  60
KIQAICQKVK RERAKKIAAK KLSSATAHAN RKESEKINSS ASSSSSSLPL SPPSIFCDNW  120
ANELFSPTVS EDGIWKGENS PTSVSTECPM MVTDETEFEG CSLARLPSFD PELIWEVLAV  180
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519928.11e-129ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-33ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3VNG81e-127A0A1S3VNG8_VIGRR; ethylene-responsive transcription factor ERF061
STRINGXP_007158572.11e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-24ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]