PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g02310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 469aa    MW: 52097.5 Da    PI: 5.1058
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g02310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-351402302101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++ ++lisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+++ll+
  Vradi11g02310.1 140 FLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGERTLLR 224
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Vradi11g02310.1 225 DIQRRK 230
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-38129223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-59136229IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-35137229IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-32140229IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-20140163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-20178190IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340179203IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-20191203IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MKQRLITAPT NVFFSHSYFS WAPPIFFFFF LFQLFPFHSR THERPLFSFF LPINLLPSET  60
SRNNKNLPSL SLSLSTVNFS ASDGLSPTLL AAEYCFQYYT DQIKVSVPDL VAERMMAPLP  120
VEQTAESAPA ESQRSIPTPF LTKTYQLVDD PSADDLISWN EDGTSFIVWR PAEFARDLLP  180
KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANDCFRRGER TLLRDIQRRK ILPVPPTAQP  240
AVATANTVTV AVAAPAIRTV SPTTSGDEQV LSSNSSPIAG NNNITVHRTT SCTTTPELLE  300
ENERLRKENM QLNHELSQLK SLCNNILALM TNYASGFSRQ QLESSTSAVR TVPVPEGKAL  360
ELLPAKHVSS ADDAMHGGAA GLAPCTNANA AEAEVPKLFG VSIGLKRCRT ECEAEPEVEE  420
QNQMQTRAQA QTQTQSSQEP DGGPDVKSEP LDGEESDDQD PRWLELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2614022929129Heat shock factor protein 1
5d5v_B3e-2614022929129Heat shock factor protein 1
5d5v_D3e-2614022929129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g02310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521482.10.0heat stress transcription factor B-2b
RefseqXP_014521483.10.0heat stress transcription factor B-2b
RefseqXP_014521484.10.0heat stress transcription factor B-2b
RefseqXP_014521485.10.0heat stress transcription factor B-2b
RefseqXP_014521486.10.0heat stress transcription factor B-2b
RefseqXP_014521487.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-95HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3VSX80.0A0A1S3VSX8_VIGRR; heat stress transcription factor B-2b
STRINGXP_007158472.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-84HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]