PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g02420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 209aa    MW: 23569.3 Da    PI: 4.7439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g02420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-194999155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++  +++Wv+e r+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Vradi11g02420.1 49 PVYRGVRRRN-NNKWVCEMRVPNN---NSRIWLGTYPTPEMAARAHDVAALALRG 99
                     68*****887.8*********944...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-144999IPR001471AP2/ERF domain
PROSITE profilePS5103221.45650107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3050109IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2150109IPR016177DNA-binding domain
SMARTSM003803.6E-2750113IPR001471AP2/ERF domain
PRINTSPR003672.0E-75162IPR001471AP2/ERF domain
CDDcd000185.20E-2951109No hitNo description
PRINTSPR003672.0E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEHDSEASCE TGSPTTVQSS GYSDEEVILA SSRPKKRAGR RVFKETRHPV YRGVRRRNNN  60
KWVCEMRVPN NNSRIWLGTY PTPEMAARAH DVAALALRGK SACLNFADSV WRLAVPDSTD  120
AEEIRRAAVE AAEAFMGEDV SQQQRNEGIE EPPRLQQEEM SEVEELHDLL LRIANEPLMS  180
PPPCVRDGRE WNDVEIFDAE VSLWSFSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g02420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520325.11e-153dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ67e-62DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A1S3VPW21e-151A0A1S3VPW2_VIGRR; dehydration-responsive element-binding protein 1E
STRINGXP_007158456.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.28e-47ERF family protein