PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LSD
Protein Properties Length: 129aa    MW: 13588.9 Da    PI: 7.8905
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.71.9e-131337125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL YP GA+sV+Ca+C++V
  Vradi11g03660.1 13 CSGCRNLLLYPVGATSVCCAVCHAV 37
                     ************************9 PP
2zf-LSD145.99.1e-155074125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC++lL+Y rGA+sV+C++C+tV
  Vradi11g03660.1 50 CGGCHILLMYIRGATSVQCSCCHTV 74
                     ************************9 PP
3zf-LSD140.73.9e-1388112125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+ lL+YP+GA+sV+Ca+C +V
  Vradi11g03660.1  88 CGNCKMLLRYPYGARSVKCAVCSFV 112
                      **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.2E-131040IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-101337IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.108.6E-427109No hitNo description
SuperFamilySSF486958.09E-527109IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.1E-134776IPR005735Zinc finger, LSD1-type
PfamPF069434.2E-125074IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-1185115IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-1188112IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSSYECPQNQ LVCSGCRNLL LYPVGATSVC CAVCHAVTTV PPPEMAQLVC GGCHILLMYI  60
RGATSVQCSC CHTVNLALEA NQVAHVNCGN CKMLLRYPYG ARSVKCAVCS FVTLVGASTS  120
TTEQKFST*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-92BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643220.12e-83protein LOL1 isoform X2
SwissprotQ93ZB14e-70LOL1_ARATH; Protein LOL1
TrEMBLA0A3Q0FGM95e-82A0A3Q0FGM9_VIGRR; protein LOL1 isoform X2
STRINGGLYMA01G40720.21e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-61lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]