PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 105aa    MW: 11485.7 Da    PI: 8.7547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-061032123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C + F++   L  H+++H
  Vradi11g03720.1 10 YTCTYCRREFRSAQALGGHMNVH 32
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-7737No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4835IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00571032IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-71033IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3441037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
METTWPPRSY TCTYCRREFR SAQALGGHMN VHRRDRARLN QPSPSSTATS SLPTSSPYIN  60
IPPQDLVANA GKVEQSATSS SFATGHLEEL DLELRLGHKP TQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-14532229superman protein
2l1o_A2e-14532229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-105AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427025.13e-43PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotO809421e-19ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A1S3VQB21e-44A0A1S3VQB2_VIGRR; transcriptional regulator SUPERMAN
STRINGXP_004511786.13e-33(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-21zinc-finger protein 10