PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g04020.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 206aa MW: 22635.2 Da PI: 10.5804

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g04020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.9e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Vradi11g04020.1 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55 79*********************************9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.669	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-15	2	68	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-12	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.43E-18	6	57	No hit	No description
PROSITE profile	PS51504	14.189	115	205	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	1.4E-4	121	201	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.96E-8	124	197	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-9	126	198	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.4E-5	128	197	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLLPSP KIDNNHMALS TAVQRDRGAG DPKPLAVSGG VSPNSKEKVS 120 RLQNFQLDNI ILESIIKLKE PKGSDRAAIA SYIEYQCMES NDNSSPHQDQ YCSTPTLRKL 180 LSTKLKHMVA SGKLMKMVSA SALLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g04020.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-109	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014519201.1	1e-127	telomere repeat-binding factor 2 isoform X1
Refseq	XP_014519203.1	1e-127	telomere repeat-binding factor 2 isoform X1
Refseq	XP_022631317.1	1e-127	telomere repeat-binding factor 2 isoform X2
Refseq	XP_022631318.1	1e-127	telomere repeat-binding factor 2 isoform X1
Swissprot	Q8VWK4	4e-55	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A1S3VLG1	1e-125	A0A1S3VLG1_VIGRR; telomere repeat-binding factor 2 isoform X1
STRING	XP_007156706.1	1e-119	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-52	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]