PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04790.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 148aa    MW: 16605.8 Da    PI: 7.9545
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.94.5e-261068260
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
     HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                     Fl+k+ye+++d+ ++e+isws++gn+fvv+++ ef+k++Lpk Fkh+nf+SFvRQLn+Y
  Vradi11g04790.1 10 FLTKTYELVDDPGTNEVISWSDTGNTFVVWKHAEFSKDLLPKCFKHNNFSSFVRQLNTY 68
                     9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-27369IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-266123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.79E-23768IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-151033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-221072IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-154860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-156173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYELVDD PGTNEVISWS DTGNTFVVWK HAEFSKDLLP KCFKHNNFSS  60
FVRQLNTYMR QGSCGSEKAV GEEGGGECLK LFGVWLKEDT LADKRNNNHK RAREDQMGFG  120
GPRLKESKPV VDFEPINLIM TSNKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-195861690Heat shock factor protein 1
5hdg_A9e-20686780Heat shock factor protein 1
5hdn_A9e-20686780Heat shock factor protein 1
5hdn_B9e-20686780Heat shock factor protein 1
5hdn_C9e-20686780Heat shock factor protein 1
5hdn_D9e-20686780Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g04790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-120AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519942.12e-51heat shock factor protein HSF24
RefseqXP_022631341.12e-51heat shock factor protein HSF24
TrEMBLA0A1S3VP285e-50A0A1S3VP28_VIGRR; heat shock factor protein HSF24
STRINGXP_007156806.13e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-33heat shock factor 4