PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g05430.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 196aa MW: 22512.3 Da PI: 7.504

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g05430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	47	101	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++++eq++ Le+ F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Vradi11g05430.1 47 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 101 45589************************************************95 PP
2	HD-ZIP_I/II	108.4	5.3e-35	46	133	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk++++a e++rLe+e e+ Vradi11g05430.1 46 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEANLLEKCRLETEAEKEI 133 58*******************************************************************************9987644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.103	42	102	IPR001356	Homeobox domain
SMART	SM00389	2.7E-17	45	106	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-18	47	111	IPR009057	Homeodomain-like
CDD	cd00086	7.85E-16	47	103	No hit	No description
Pfam	PF00046	1.6E-16	47	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.6E-21	49	109	IPR009057	Homeodomain-like
PRINTS	PR00031	3.0E-5	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-5	82	98	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MMFIPQLYPA DAPYTQIIAQ QGESKKPKRR RSKKNKGGEN GASEANRKRK LSAEQVNLLE 60 QNFGNEHKLE SERKDRLALE LGLDPRQVAV WFQNRRARWK NKKLEEEYSN LKKSHEANLL 120 EKCRLETEAE KEIQRLLESG DRVPSNSSSS SQSQSMEAVD PPFFGVFGVD GYDDDVFYGP 180 ETHCMNALEW INLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	33	PKRRRSKK
2	28	49	RRRSKKNKGGENGASEANRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g05430.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-164	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520467.1	1e-121	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-61	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A1S3VQJ9	1e-119	A0A1S3VQJ9_VIGRR; homeobox-leucine zipper protein ATHB-40
STRING	XP_007156908.1	1e-108	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-47	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]