PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g05440.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 668aa    MW: 74542 Da    PI: 5.8214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g05440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.81.8e-821615172374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L+++A+++++++l+ aq +L+rl+++ +sp g+p+qR+a+yf+eAL++ l++      +  +p+ +s  + ++ +  +k+fs +sPi+ fs
  Vradi11g05440.1 161 IEELIRAADCFDTKQLHVAQVILERLNQRlRSPVGKPLQRAAFYFKEALQSLLSG------SNRTPRISSLVEIVHGIRTFKAFSGISPIPMFS 248
                      679*************************99*************************......5556666666678999999999*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +t+Nq +l+ +  ++ +H+iDfdi+ G+Q+++L++++a+++ ++p lRiT+v+++e   + e   ++e+La+fA el+++++ +++  +++e+
  Vradi11g05440.1 249 IFTTNQVVLDHA-ACSFMHVIDFDIGLGIQYASLMKEIAEKATESPLLRITAVVPEE--YAVESTLVRENLAQFALELRIRVQVDFVPLRTFET 339
                      **********86.5899**************************************66..8999999********************9999**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adh.nsesFlerflealeyysalfdsleaklpr 277
                      l++++ ++  gE++ V l+  ++r l   ++ +    ++L  ++ +sP vvv+v++e    + +  ++sF ++++++leyys++++sl+++ + 
  Vradi11g05440.1 340 LSFKAVKLVDGESTTVLLSPVIFRHL---GNAA----AFLADLRMVSPSVVVLVDSEgwadMATaAASSFRRGVVSSLEYYSMMLESLDVSTAG 426
                      *************************9...4444....5*******************88553333677********************877666 PP

             GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         e+ + +E + l+++i  +v  +         ++  Wre +  aG++pv+ls+++  qa++ll+k + +g++ve+++++l+l W+dr++vs 
  Vradi11g05440.1 427 GGgEWVRRIEMMHLRPKILAAVESSWG-------RMPPWRESFYGAGMRPVQLSQFVDFQAECLLAKSQIRGFHVEKRQNELILFWHDRAMVSS 513
                      55599*************999876554.......589********************************************************* PP

             GRAS 371 SaWr 374
                      SaWr
  Vradi11g05440.1 514 SAWR 517
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.648134497IPR005202Transcription factor GRAS
PfamPF035146.3E-80161517IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MRVPVPSSPQ ANPKPTNNLL RTIALPNLNT TSLCYEPTSV LDLCRSPSPG SEKPTDHSVV  60
VTDSQDYLDL DDHALHNLDW DSIMKDLGLH DDSGAPLLKT ILHPDNNNNN PCDDFTIAPF  120
DHAIEFSTLS DIYSNQNLTF DFNHLVHDFS NQHHNSGFDF IEELIRAADC FDTKQLHVAQ  180
VILERLNQRL RSPVGKPLQR AAFYFKEALQ SLLSGSNRTP RISSLVEIVH GIRTFKAFSG  240
ISPIPMFSIF TTNQVVLDHA ACSFMHVIDF DIGLGIQYAS LMKEIAEKAT ESPLLRITAV  300
VPEEYAVEST LVRENLAQFA LELRIRVQVD FVPLRTFETL SFKAVKLVDG ESTTVLLSPV  360
IFRHLGNAAA FLADLRMVSP SVVVLVDSEG WADMATAAAS SFRRGVVSSL EYYSMMLESL  420
DVSTAGGGGE WVRRIEMMHL RPKILAAVES SWGRMPPWRE SFYGAGMRPV QLSQFVDFQA  480
ECLLAKSQIR GFHVEKRQNE LILFWHDRAM VSSSAWRLDS VCSFVLLVPT LGELYQVHCI  540
ASGWKAYGSF SLVEVFTDKL ISWHQARVDR VLGFAYCEVI KLVSSYHAEI KLVKSMVVKI  600
TGSGETILFL PFAIAATYYP FMLLTNKFDA AEKLLRGTAE SDRSQQHSSA EDPALPSDTE  660
PDQNHNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1916651624377Protein SCARECROW
5b3h_D1e-1916651624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g05440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519296.10.0scarecrow-like protein 15
SwissprotO232101e-162SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3VLQ70.0A0A1S3VLQ7_VIGRR; scarecrow-like protein 15
STRINGXP_007156910.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-155GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]