PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g06620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 209aa    MW: 23703 Da    PI: 9.2966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g06620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.31.6e-08125177454
                      XCHHHCHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRK..kaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      ++r +r++kNRe+  +  q+K  +a++ eLe +v++L++eN +Lk + +++k 
  Vradi11g06620.1 125 DRRNKRMIKNRESRIKTKQKKchEAYTNELEVEVEQLKEENARLKRQQKQWKR 177
                      689******************8789**********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0047122191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-7125178No hitNo description
CDDcd147072.23E-17126174No hitNo description
PfamPF001707.5E-7126176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEEVWKDINL ATLNDQVTRS TTTHSNLGGV ILQDFLARPF TIDPPNTILS SQSPTLYAAP  60
SSPAPPLLTA LSLSSHPHLR FDPHTQKPSH PHHPPPPSNH SCFTTPTTAS LGAKRFAEPD  120
CNLGDRRNKR MIKNRESRIK TKQKKCHEAY TNELEVEVEQ LKEENARLKR QQKQWKRGPE  180
KCYMLEDILQ DKTFCSFRFV APTIIMSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g06620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631457.11e-103protein FD-like
TrEMBLA0A3Q0EMK61e-102A0A3Q0EMK6_VIGRR; protein FD-like
STRINGXP_007157879.14e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.19e-11bZIP family protein