PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g08220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 254aa    MW: 28394.8 Da    PI: 6.9468
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g08220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC42.89.4e-146892125
              WRC  1 daepgrCrRtDGKkWRCsrrvlegk 25
                     d+epgrCrRtDGKkWRCsr++ +++
  Vradi11g08220.1 68 DPEPGRCRRTDGKKWRCSRDAHPDS 92
                     79********************997 PP
2QLQ58.32.3e-201449237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k
  Vradi11g08220.1 14 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 49
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-121349IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.6931449IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-151448IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166713.05668112IPR014977WRC domain
PfamPF088795.4E-106992IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSVPPPSTAA MWTPFTAAQW HELEHQALIF KYLKAGLSVP PDLLLPIRKS LQFMAHPSLG  60
GYYGKKIDPE PGRCRRTDGK KWRCSRDAHP DSNATTATPT LPHLHMDPLT LSGDNTKKTY  120
RFGLNSEADE HVLQKDLGSV RYQGYDFTSD SMWSHMSPIP SSTVSESRSG STMLGNCFQQ  180
QTMRDAELLN LETARTKDLI FSSQLSSGGS LKQEYQSPQS LFSDWDWKKD LSSSAIEYRP  240
NKDFNCNPDA NVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g08220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360802.11e-132growth-regulating factor 5-like
TrEMBLA0A0S3T3921e-109A0A0S3T392_PHAAN; Uncharacterized protein
STRINGXP_007158190.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149481112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-30growth-regulating factor 5