PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25790.2 Da    PI: 8.4598
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.6e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
  Vradi11g09130.1  9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYAS 59
                     69***********************************************86 PP
2K-box13.14.1e-0679109837
            K-box   8 s.leeakaeslqqelakLkkeienLqreqRh 37 
                      + + ea+ + +++e++ L+++++ Lq+++R 
  Vradi11g09130.1  79 QiNPEAEVKFWKREAEILRQQLQILQENHRT 109
                      2378999**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
CDDcd002657.78E-44277No hitNo description
SuperFamilySSF554556.54E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLLIFSS TGKLYEYAST  60
SMKSIIERYN ACKEEQHHQI NPEAEVKFWK REAEILRQQL QILQENHRTQ ANDGRTTLWS  120
ECQKPTRSRE STGNEPPRCP YEKGQEQILK DEIQELNRKG NLIFQENVEL YKKVYGTTDT  180
ATTSRNAFVP LPFGMHAGGP PQELVQLQLC QPEQEAYETS DTATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21192192MEF2C
5f28_B3e-21192192MEF2C
5f28_C3e-21192192MEF2C
5f28_D3e-21192192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g09130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521490.11e-132MADS-box transcription factor 23 isoform X2
SwissprotQ388408e-68AGL17_ARATH; Agamous-like MADS-box protein AGL17
SwissprotQ9SZJ68e-68AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1S3VT581e-131A0A1S3VT58_VIGRR; MADS-box transcription factor 23 isoform X2
STRINGGLYMA01G02525.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.17e-65AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]