PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09470.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 229aa    MW: 25970.3 Da    PI: 10.761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-1054111354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksL 54 
                      ++h+e+E+rRR riN  +e+Lr++lP++          +++  +Ka++L ++++ +k+L
  Vradi11g09470.1  54 KKHSEAEKRRRMRINGQYETLRTILPNLIkhgeldfVMNHQ-KDKASVLAETIKQVKEL 111
                      68*************************98788888633333.36888888888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1145120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.72551111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-854111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-754116No hitNo description
Gene3DG3DSA:4.10.280.108.9E-1255122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-857117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVFLLQGMQH LQSYYNSEAK MIRGGFPRPF ISRTYQTSFL KQRSKTEIKV VAAKKHSEAE  60
KRRRMRINGQ YETLRTILPN LIKHGELDFV MNHQKDKASV LAETIKQVKE LKKKVSEVEQ  120
DRCGNSSKDV VKFPSGADRL RLEKCNNEED LVKATLSCED SLGLMSAISR AMESVKTKVV  180
KAEIVSVGGR NRSVLWVQGL GNDRMGMLKS SLKIAMHKPA FKMRRSTH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g09470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519722.11e-164transcription factor bHLH131-like
TrEMBLA0A1S3VNF61e-163A0A1S3VNF6_VIGRR; transcription factor bHLH131-like
STRINGXP_007158377.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.15e-40bHLH family protein