PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 250aa    MW: 26811 Da    PI: 7.8586
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.64.5e-3150104358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhA+ +Ggha+DGCgEfm++ g+eg+ +alkCaAC CHRnFHR+e++
  Vradi11g10080.1  50 RARYRECLKNHAVGIGGHALDGCGEFMAA-GTEGSLDALKCAACSCHRNFHRKESD 104
                      689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2249104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2851103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2852102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17253102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.4E-32173248IPR009057Homeodomain-like
SuperFamilySSF466898.37E-19174247IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25186242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEFEDQEDQE EEQCMGAAAY DPTRVKLPLG PEAVMAAQPV RSTTNGGAGR ARYRECLKNH  60
AVGIGGHALD GCGEFMAAGT EGSLDALKCA ACSCHRNFHR KESDGAGASV GVGDPYLVSH  120
HPLHHGPPPQ FAAYYRTPTG YLQVGGQARV AGTLALPSTS GGGGTQSTRE DQEDISNPSA  180
GGTGSKKRFR TKFTQEQKDK MLELAEKLGW RIQKHDEGVV QAFCNETGVK RHVLKVWMHN  240
NKHTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251852441675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520131.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2592e-75ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A1S3VP220.0A0A1S3VP22_VIGRR; zinc-finger homeodomain protein 1-like
STRINGXP_007158386.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-69homeobox protein 22