PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g10430.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 420aa MW: 45398.2 Da PI: 7.9997

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g10430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	135	195	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+ss Vradi11g10430.1 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSS 195 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	123	192	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	137	193	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	139	193	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	141	177	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MSEAAKDSAI KLFGRTISLP RHKEVSANGS SSEPAPPQDY SHHHSPPSSS SFPREVTSTT 60 NHEPESDKET SRKELTSTQD DEILHEELKS PTSSCNLENP KTPSTEIETS LTKSPKKGDQ 120 SDTTSASEDK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKHCQ RYWTAGGTMR 180 NVPVGAGRRK NKNSSSAASH YRQIMVPETL HNGSLHSAVL TFGSDFPLCD SMASVLSLAE 240 KTQNGVLNGF HSPKNNASTV NNSNTGDDIK SVGASVMASS LSFWRCMPPP SWSVNYQSAP 300 CSGPNSPTLG KHSREGDILF QKPGTESSSN MAENSNNTVL IPKTLRIDDP TEAAKSSIWS 360 TLGIENEKGN SLNGGGLFKA FASKGGSDDK KNHVVVEASP VLQANPAALS RSLVFHERT*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MSEAAKDSAI KLFGRTISLP RHKEVSANGS SSEPAPPQDY SHHHSPPSSS SFPREVTSTT  60
NHEPESDKET SRKELTSTQD DEILHEELKS PTSSCNLENP KTPSTEIETS LTKSPKKGDQ  120
SDTTSASEDK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKHCQ RYWTAGGTMR  180
NVPVGAGRRK NKNSSSAASH YRQIMVPETL HNGSLHSAVL TFGSDFPLCD SMASVLSLAE  240
KTQNGVLNGF HSPKNNASTV NNSNTGDDIK SVGASVMASS LSFWRCMPPP SWSVNYQSAP  300
CSGPNSPTLG KHSREGDILF QKPGTESSSN MAENSNNTVL IPKTLRIDDP TEAAKSSIWS  360
TLGIENEKGN SLNGGGLFKA FASKGGSDDK KNHVVVEASP VLQANPAALS RSLVFHERT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g10430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425996.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0L9UT88	0.0	A0A0L9UT88_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T2U9	0.0	A0A0S3T2U9_PHAAN; Uncharacterized protein
STRING	XP_007157611.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-74	cycling DOF factor 2